Motif View

Internal ID 17678805
Source Database TransTermHP TERM 917
Feature Type terminator
Name
Rho-independent transcription terminator TERM 917
Sequence GCCGCTGCATCTGCAGCGGC
Look for more occurrences
Start 4241458
End 4241477
Strand -
Genomic Context
Replicon Pseudomonas stutzeri DSM 4166 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGCGCAAAAAAAAA(5' tail) GCCGCTGC(5' stem) AGAT(loop) GCAGCGGC(3' stem) CTTCTTCAGCAACAA(3' tail). Confidence: 100. opp_overlap 4241458 4241457

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685