Motif View

Internal ID 17678818
Source Database TransTermHP TERM 944
Feature Type terminator
Name
Rho-independent transcription terminator TERM 944
Sequence GCCCGCAAACGCGGGC
Look for more occurrences
Start 4364620
End 4364635
Strand +
Genomic Context
Replicon Pseudomonas stutzeri DSM 4166 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCAGAAACGAAAAA(5' tail) GCCCGC(5' stem) AAAC(loop) GCGGGC(3' stem) TTTTTCATGTCCGAT(3' tail). Confidence: 100. opp_overlap 4364620 4364614 4364613

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685