Motif View

Internal ID 17679497
Source Database TransTermHP TERM 982
Feature Type terminator
Name
Rho-independent transcription terminator TERM 982
Sequence GCTTCGGCCAGGCTCGCCTGGCCGAACGC
Look for more occurrences
Start 4470842
End 4470870
Strand -
Genomic Context
Replicon Pseudomonas stutzeri CCUG 29243 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGTGCTTCGCAAAAA(5' tail) GCGTTCGGCCAGG(5' stem) CGAG(loop) CCTGGCCGAA-GC(3' stem) GGGACCGCGGCGAAT(3' tail). Confidence: 100. gap 1, overlap 4470843

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685