Motif View

Internal ID 17679703
Source Database TransTermHP TERM 306
Feature Type terminator
Name
Rho-independent transcription terminator TERM 306
Sequence GCCGGGGCCTTGTGCCCCGGC
Look for more occurrences
Start 1458312
End 1458332
Strand +
Genomic Context
Replicon Pseudomonas stutzeri DSM 10701 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTTCCACGGAAGGAA(5' tail) GCCGGGGC(5' stem) CTTGT(loop) GCCCCGGC(3' stem) TTTCGTTTCAGGGCC(3' tail). Confidence: 100. opp_overlap 1458308 1458312, overlap 1458308 1458293

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685