Motif View

Internal ID 17682847
Source Database TransTermHP TERM 98
Feature Type terminator
Name
Rho-independent transcription terminator TERM 98
Sequence CGCCGGCGATCGCCGGCG
Look for more occurrences
Start 463122
End 463139
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa B136-33, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACCTGAAACGAAAAA(5' tail) CGCCGGC(5' stem) GATC(loop) GCCGGCG(3' stem) TTTTTCATTGTGCTT(3' tail). Confidence: 100. opp_overlap 463116 463115 463122, overlap 463116 463115

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685