Motif View

Internal ID 17683777
Source Database TransTermHP TERM 17
Feature Type terminator
Name
Rho-independent transcription terminator TERM 17
Sequence CCCGGTGCGATACTGTATCCATATACAGTATTTCGCCGGG
Look for more occurrences
Start 82066
End 82105
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa RP73, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCTGTGGGCCGGGG(5' tail) CCCGGTGCGATACTGTAT(5' stem) CCAT(loop) ATACAGTATTTCGCCGGG(3' stem) TTTCCCTCATGAGCG(3' tail). Confidence: 93.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685