Motif View

Internal ID 17685160
Source Database TransTermHP TERM 625
Feature Type terminator
Name
Rho-independent transcription terminator TERM 625
Sequence CAGGCCCGCTTGCGGGCCTG
Look for more occurrences
Start 3045612
End 3045631
Strand -
Genomic Context
Replicon Pseudomonas stutzeri RCH2 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CATGCCGAACGAAAA(5' tail) CAGGCCCG(5' stem) CAAG(loop) CGGGCCTG(3' stem) TTCGACATCACACAA(3' tail). Confidence: 100. opp_overlap 3045614

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685