Motif View

Internal ID 17686185
Source Database TransTermHP TERM 1051
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1051
Sequence CCCCCGACCCGCCAGAGGCAGATCGGGGG
Look for more occurrences
Start 4751143
End 4751171
Strand -
Genomic Context
Replicon Pseudomonas sp. UW4 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCGCTTACTCGAAA(5' tail) CCCCCGATCTGCC(5' stem) TCT(loop) GGCGGGTCGGGGG(3' stem) TTTTCTTTTGCCTCA(3' tail). Confidence: 100. opp_overlap 4751143

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685