Motif View

Internal ID 17686187
Source Database TransTermHP TERM 1053
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1053
Sequence GCCCCTCGAGAGAGGGGC
Look for more occurrences
Start 4751336
End 4751353
Strand -
Genomic Context
Replicon Pseudomonas sp. UW4 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCAGGCCACAAAAAA(5' tail) GCCCCTC(5' stem) TCTC(loop) GAGGGGC(3' stem) TTTTTATGCAGCGCG(3' tail). Confidence: 100. opp_overlap 4751336

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685