Motif View

Internal ID 17686390
Source Database TransTermHP TERM 1318
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1318
Sequence CCGCTGCTCCTTCGGGACCAGCGG
Look for more occurrences
Start 5682997
End 5683020
Strand -
Genomic Context
Replicon Pseudomonas sp. UW4 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGCCCCCAAAAAAAA(5' tail) CCGCTGGTCC(5' stem) CGAA(loop) GGAGCAGCGG(3' stem) CTTTTTCAAGTGCTT(3' tail). Confidence: 100. opp_overlap 5682997 5682996

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685