Motif View

Internal ID 17686391
Source Database TransTermHP TERM 1319
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1319
Sequence CGCCGCGCCTGTTCGCGGCG
Look for more occurrences
Start 5685083
End 5685102
Strand -
Genomic Context
Replicon Pseudomonas sp. UW4 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACTTACGTACAAAAA(5' tail) CGCCGCG(5' stem) AACAGG(loop) CGCGGCG(3' stem) CTGGAAGGTGCGGAT(3' tail). Confidence: 100. overlap 5685094

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685