Motif View

Internal ID 17686757
Source Database TransTermHP TERM 370
Feature Type terminator
Name
Rho-independent transcription terminator TERM 370
Sequence GGCGCCCATCCTCGATGGGCGCC
Look for more occurrences
Start 1455258
End 1455280
Strand -
Genomic Context
Replicon Pseudomonas protegens CHA0, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGTAGCGATAAAAAA(5' tail) GGCGCCCATC(5' stem) GAG(loop) GATGGGCGCC(3' stem) GACAGGTTATTTACC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685