Motif View

Internal ID 17687504
Source Database TransTermHP TERM 1512
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1512
Sequence CCCGCTGCTGCGGG
Look for more occurrences
Start 6271595
End 6271608
Strand -
Genomic Context
Replicon Pseudomonas protegens CHA0, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCAAGCACGAAAAAA(5' tail) CCCGC(5' stem) AGCA(loop) GCGGG(3' stem) CTTTGTTCGTGCCGC(3' tail). Confidence: 100. opp_overlap 6271594 6271595, overlap 6271587

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685