Motif View

Internal ID 17688585
Source Database TransTermHP TERM 163
Feature Type terminator
Name
Rho-independent transcription terminator TERM 163
Sequence CGAGGAGGCCCGCTTCGCCGCGGGCCTCCTCG
Look for more occurrences
Start 515098
End 515129
Strand +
Genomic Context
Replicon Pseudomonas denitrificans ATCC 13867, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AATCCCCACGCCAGA(5' tail) CGAGGAGGCCCGC(5' stem) TTCGCC(loop) GCGGGCCTCCTCG(3' stem) TTTTTTGCTACATAT(3' tail). Confidence: 100. opp_overlap 515101

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685