Pseudomonas syringae pv. tomato DC3000

Strain Overview
Organism Name Pseudomonas syringae pv. tomato DC3000
Species Pseudomonas syringae pv. tomato
Strain DC3000
Description/Title Sample from Pseudomonas syringae pv. tomato str. DC3000
Annotated Genes 5842
Partial Genes
Host Information
Host Species Taxonomic Name Solanum lycopersicum
Host Species Common Name tomato
Host Species Taxonomy ID 4081
Host Species Disease bacterial speck
Geographic Location

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02604017
NCBI Taxonomy ID 223283
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome.
Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A, complete sequence.
Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B, complete sequence.

Annotated Features

Feature Count
gene 5834
CDS 5619
tRNA 63
ncRNA 28
pseudo 16
rRNA 15

Subcellular Localization

Localization Count
Cytoplasmic 2381
Cytoplasmic Membrane 1212
Periplasmic 172
Outer Membrane 121
Extracellular 73
Unknown 1535
Unknown (This protein may have multiple localization sites) 125
Flagellar 17
Fimbrial 7
T3SS 2

Replicons

Name Length GC
Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. 6397126 bp 58.4%
Replicon details
Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A, complete sequence. 73661 bp 55.1%
Replicon details
Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B, complete sequence. 67473 bp 56.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs