Strain Overview | |
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Organism Name | Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) |
Species | Pseudomonas syringae pv. tomato |
Strain | DC3000 |
Description/Title | Sample from Pseudomonas syringae pv. tomato str. DC3000 |
Annotated Genes | 5842 |
Partial Genes |
Host Information | |
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Host Species Taxonomic Name | Solanum lycopersicum |
Host Species Common Name | tomato |
Host Species Taxonomy ID | 4081 |
Host Species Disease | bacterial speck |
Geographic Location |
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Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02604017 |
NCBI Taxonomy ID | 223283 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 5834 |
CDS | 5619 |
tRNA | 63 |
ncRNA | 28 |
rRNA | 15 |
pseudo | 8 |
Localization | Count |
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Cytoplasmic | 2381 |
Cytoplasmic Membrane | 1212 |
Periplasmic | 172 |
Outer Membrane | 121 |
Extracellular | 73 |
Unknown | 1535 |
Unknown (This protein may have multiple localization sites) | 125 |
Flagellar | 17 |
Fimbrial | 7 |
T3SS | 2 |
Name | Length | GC | |
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Pseudomonas syringae pv. tomato str. DC3000 chromosome, complete genome. | 6397126 bp | 58.4% |
Replicon details
|
Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A, complete sequence. | 73661 bp | 55.1% |
Replicon details
|
Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B, complete sequence. | 67473 bp | 56.2% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |