Strain Overview | |
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Organism Name | Pseudomonas protegens Pf-5 |
Species | Pseudomonas protegens |
Strain | Pf-5 |
Description/Title | Sample from Pseudomonas protegens Pf-5 |
Annotated Genes | 6273 |
Partial Genes |
Host Information |
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Geographic Location | |
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Location Name | USA: Texas |
Isolation Source | soil |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02604012 |
NCBI Taxonomy ID | 220664 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas protegens Pf-5 chromosome, complete genome. |
Feature | Count |
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gene | 6211 |
CDS | 6108 |
tRNA | 70 |
pseudo | 62 |
ncRNA | 17 |
rRNA | 16 |
Localization | Count |
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Cytoplasmic | 2630 |
Cytoplasmic Membrane | 1482 |
Periplasmic | 213 |
Outer Membrane | 163 |
Extracellular | 63 |
Unknown | 1415 |
Unknown (This protein may have multiple localization sites) | 142 |
Flagellar | 16 |
Fimbrial | 7 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas protegens Pf-5 chromosome, complete genome. | 7074893 bp | 63.3% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |