| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas savastanoi pv. phaseolicola 1448A |
| Species | Pseudomonas savastanoi pv. phaseolicola |
| Strain | 1448A |
| Description/Title | Sample from Pseudomonas savastanoi pv. phaseolicola 1448A |
| Annotated Genes | 5437 |
| Partial Genes |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Phaseolus vulgaris |
| Host Species Common Name | kidney bean |
| Host Species Taxonomy ID | 3885 |
| Host Species Disease | halo blight |
| Geographic Location |
|---|
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02603162 |
| NCBI Taxonomy ID | 264730 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 5437 |
| CDS | 5172 |
| pseudo | 184 |
| tRNA | 64 |
| rRNA | 16 |
| misc_RNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2229 |
| Cytoplasmic Membrane | 1163 |
| Periplasmic | 162 |
| Outer Membrane | 102 |
| Extracellular | 79 |
| Unknown | 1317 |
| Unknown (This protein may have multiple localization sites) | 120 |
| Flagellar | 18 |
| Fimbrial | 8 |
| T3SS | 4 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas syringae pv. phaseolicola 1448A chromosome, complete genome. | 5928787 bp | 58.0% |
Replicon details
|
| Pseudomonas syringae pv. phaseolicola 1448A large plasmid, complete sequence. | 131950 bp | 54.1% |
Replicon details
|
| Pseudomonas syringae pv. phaseolicola 1448A small plasmid, complete sequence. | 51711 bp | 56.0% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |