Pseudomonas putida F1

Strain Overview
Organism Name Pseudomonas putida F1
Species Pseudomonas putida
Strain F1
Description/Title Sample of PSEUDOMONAS PUTIDA F1
Annotated Genes 5402
Partial Genes
Host Information
Geographic Location
Location Name USA: Illinois, Urbana
Isolation Source polluted creek
Sample Provider
Name
E-mail
Institution Joint Genome Institute, U.S. Department of Energy
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pputida 43
ppsA
4		 argS
31		 ileS
8		 gyrB
14		 rpoD
6		 argS
31		 nuoC
4		 argS
31		 argS
31		 rpoB
1		 argS
31		 recA
12
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000016865.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN00623058
NCBI Taxonomy ID 351746
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas putida F1 chromosome, complete genome.

Annotated Features

Feature Count
gene 5402
CDS 5249
tRNA 75
pseudo 56
rRNA 19
misc_RNA 2
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2381
Cytoplasmic Membrane 1226
Periplasmic 163
Outer Membrane 144
Extracellular 40
Unknown 1164
Unknown (This protein may have multiple localization sites) 131
Flagellar 19
Fimbrial 3

Replicons

Name Length GC
Pseudomonas putida F1 chromosome, complete genome. 5959964 bp 61.9%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs