Pseudomonas mendocina ymp

Strain Overview
Organism Name Pseudomonas mendocina ymp
Species Pseudomonas mendocina
Strain ymp
Description/Title Sample from Pseudomonas mendocina ymp
Annotated Genes 4703
Partial Genes
Host Information
Geographic Location
Location Name USA: Nevada, Yucca Mountain nuclear waste repository
Isolation Source volcanic tuff

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000016565.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02598392
NCBI Taxonomy ID 399739
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas mendocina ymp chromosome, complete genome.

Annotated Features

Feature Count
gene 4703
CDS 4594
tRNA 67
pseudo 27
rRNA 12
misc_RNA 2
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2134
Cytoplasmic Membrane 1071
Periplasmic 123
Outer Membrane 116
Extracellular 46
Unknown 949
Unknown (This protein may have multiple localization sites) 155
Flagellar 32
Fimbrial 3
T3SS 2

Replicons

Name Length GC
Pseudomonas mendocina ymp chromosome, complete genome. 5072807 bp 64.7%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs