Pseudomonas putida W619

Strain Overview
Organism Name Pseudomonas putida W619
Species Pseudomonas putida
Strain W619
Description/Title Sample from Pseudomonas putida W619
Annotated Genes 5309
Partial Genes
Host Information
Host Species Taxonomic Name Populus trichocarpa
Host Species Common Name black cottonwood
Host Species Taxonomy ID 3694
Geographic Location

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pputida 64
argS
41		 rpoD
48		 recA
29		 argS
41		 nuoC
49		 rpoB
18		 argS
41		 ppsA
48		 ileS
42		 argS
41		 argS
41		 gyrB
50
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000019445.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02598376
NCBI Taxonomy ID 390235
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas putida W619 chromosome, complete genome.

Annotated Features

Feature Count
gene 5309
CDS 5182
tRNA 75
pseudo 26
rRNA 22
ncRNA 2
tmRNA 1
misc_RNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2306
Cytoplasmic Membrane 1209
Periplasmic 154
Outer Membrane 134
Extracellular 40
Unknown 1197
Unknown (This protein may have multiple localization sites) 142
Flagellar 17
Fimbrial 4

Replicons

Name Length GC
Pseudomonas putida W619 chromosome, complete genome. 5774330 bp 61.4%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs