Strain Overview | |
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Organism Name | Pseudomonas fluorescens Pf0-1 |
Species | Pseudomonas fluorescens |
Strain | Pf0-1 |
Description/Title | Sample from Pseudomonas fluorescens Pf0-1 |
Annotated Genes | 5829 |
Partial Genes |
Host Information |
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Geographic Location | |
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Location Name | USA: Massachusetts, Sherborn |
Isolation Source | agricultural loam |
Sample Provider | |
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Name | |
Institution | |
Date Collected | 1988 |
Database | Scheme | Sequence Type | Alleles | |||||||
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PubMLST | pfluorescens | 2 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02598267 |
NCBI Taxonomy ID | 205922 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
Feature | Count |
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gene | 5817 |
CDS | 5722 |
tRNA | 73 |
rRNA | 19 |
pseudo | 12 |
misc_RNA | 2 |
tmRNA | 1 |
Localization | Count |
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Cytoplasmic | 2525 |
Cytoplasmic Membrane | 1345 |
Periplasmic | 184 |
Outer Membrane | 131 |
Extracellular | 71 |
Unknown | 1328 |
Unknown (This protein may have multiple localization sites) | 138 |
Flagellar | 18 |
Fimbrial | 4 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas fluorescens Pf0-1 chromosome, complete genome. | 6438405 bp | 60.5% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |