Pseudomonas fluorescens F113

Strain Overview
Organism Name Pseudomonas fluorescens F113
Species Pseudomonas fluorescens
Strain F113
Description/Title Sample from Pseudomonas fluorescens F113
Annotated Genes 5962
Partial Genes
Host Information
Geographic Location

MLST Data

Database Scheme Sequence Type Alleles
PubMLST pfluorescens 6
nuoD
6		 glnS
6		 recA
6		 gyrB
6		 rpoB
6		 glnS
6		 rpoD
6		 ileS
6		 glnS
6		 glnS
6
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000237065.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02604099
NCBI Taxonomy ID 1114970
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas fluorescens F113 chromosome, complete genome.

Annotated Features

Feature Count
gene 5962
CDS 5862
tRNA 66
rRNA 16
ncRNA 8
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2641
Cytoplasmic Membrane 1387
Periplasmic 201
Outer Membrane 134
Extracellular 65
Unknown 1314
Unknown (This protein may have multiple localization sites) 120
Flagellar 37
Fimbrial 3
T3SS 4

Replicons

Name Length GC
Pseudomonas fluorescens F113 chromosome, complete genome. 6845832 bp 60.8%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs