Strain Overview | |
---|---|
Organism Name | Pseudomonas putida BIRD-1 |
Species | Pseudomonas putida |
Strain | BIRD-1 |
Description/Title | Sample from Pseudomonas putida BIRD-1 |
Annotated Genes | 5046 |
Partial Genes |
Host Information |
---|
Geographic Location | |
---|---|
Isolation Source | soil |
Database | Scheme | Sequence Type | Alleles | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
PubMLST | pputida | - |
|
||||||||
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
---|---|
Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
---|---|
NCBI BioSample Accession | SAMN02603225 |
NCBI Taxonomy ID | 931281 |
NCBI Bioprojects |
Related Data | |
---|---|
Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
---|---|
Pseudomonas putida BIRD-1 chromosome, complete genome. |
Feature | Count |
---|---|
gene | 5046 |
CDS | 4960 |
tRNA | 64 |
rRNA | 22 |
Localization | Count |
---|---|
Cytoplasmic | 2268 |
Cytoplasmic Membrane | 1180 |
Periplasmic | 157 |
Outer Membrane | 138 |
Extracellular | 31 |
Unknown | 1057 |
Unknown (This protein may have multiple localization sites) | 129 |
Flagellar | 16 |
Fimbrial | 2 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas putida BIRD-1 chromosome, complete genome. | 5731541 bp | 61.7% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |