| Strain Overview | |
|---|---|
| Organism Name | Pseudomonas putida HB3267 |
| Species | Pseudomonas putida |
| Strain | HB3267 |
| Description/Title | Sample from Pseudomonas putida HB3267 |
| Annotated Genes | 5478 |
| Partial Genes |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Homo sapiens |
| Host Species Common Name | human |
| Host Species Taxonomy ID | 9606 |
| Geographic Location | |
|---|---|
| Location Name | France: Hospital of Besan?on |
| Isolation Source | clinical |
| Database | Scheme | Sequence Type | Alleles | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | pputida | 15 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | |||||||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02604102 |
| NCBI Taxonomy ID | 1215088 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Pseudomonas putida HB3267, complete genome. | |
| Pseudomonas putida HB3267 plasmid pPC9, complete sequence. |
| Feature | Count |
|---|---|
| gene | 5478 |
| CDS | 5386 |
| tRNA | 70 |
| rRNA | 22 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2356 |
| Cytoplasmic Membrane | 1223 |
| Periplasmic | 171 |
| Outer Membrane | 123 |
| Extracellular | 37 |
| Unknown | 1358 |
| Unknown (This protein may have multiple localization sites) | 117 |
| Flagellar | 16 |
| Fimbrial | 2 |
| Name | Length | GC | |
|---|---|---|---|
| Pseudomonas putida HB3267, complete genome. | 5875750 bp | 62.6% |
Replicon details
|
| Pseudomonas putida HB3267 plasmid pPC9, complete sequence. | 80360 bp | 60.0% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |