Strain Overview | |
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Organism Name | Pseudomonas putida HB3267 |
Species | Pseudomonas putida |
Strain | HB3267 |
Description/Title | Sample from Pseudomonas putida HB3267 |
Annotated Genes | 5478 |
Partial Genes |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Geographic Location | |
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Location Name | France: Hospital of Besan?on |
Isolation Source | clinical |
Database | Scheme | Sequence Type | Alleles | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PubMLST | pputida | 15 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02604102 |
NCBI Taxonomy ID | 1215088 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas putida HB3267, complete genome. | |
Pseudomonas putida HB3267 plasmid pPC9, complete sequence. |
Feature | Count |
---|---|
gene | 5478 |
CDS | 5386 |
tRNA | 70 |
rRNA | 22 |
Localization | Count |
---|---|
Cytoplasmic | 2356 |
Cytoplasmic Membrane | 1223 |
Periplasmic | 171 |
Outer Membrane | 123 |
Extracellular | 37 |
Unknown | 1358 |
Unknown (This protein may have multiple localization sites) | 117 |
Flagellar | 16 |
Fimbrial | 2 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas putida HB3267, complete genome. | 5875750 bp | 62.6% |
Replicon details
|
Pseudomonas putida HB3267 plasmid pPC9, complete sequence. | 80360 bp | 60.0% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |