Pseudomonas sp. UW4

Strain Overview
Organism Name Pseudomonas sp. UW4
Species Pseudomonas sp.
Strain UW4
Description/Title Sample from Pseudomonas sp. UW4
Annotated Genes 5537
Partial Genes
Host Information
Host Species Taxonomic Name Phragmites australis
Host Species Common Name common reed
Host Species Taxonomy ID 29695
Geographic Location
Location Name Canada: Ontario, University of Waterloo
Isolation Source rhizosphere


Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website ( developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github
Assembly DB
Assembly Accession
Assembly Status latest
Contig N50
Assembly Level Complete Genome
Percent GC
NCBI BioSample Accession SAMN02604261
NCBI Taxonomy ID 1207075
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Pseudomonas sp. UW4 chromosome, complete genome.

Annotated Features

Feature Count
gene 5537
CDS 5423
tRNA 72
rRNA 22

Subcellular Localization

Localization Count
Cytoplasmic 2505
Cytoplasmic Membrane 1257
Periplasmic 177
Outer Membrane 113
Extracellular 41
Unknown 1205
Unknown (This protein may have multiple localization sites) 125
Flagellar 18
Fimbrial 4
T3SS 2


Name Length GC
Pseudomonas sp. UW4 chromosome, complete genome. 6183388 bp 60.1%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs