Pseudomonas protegens CHA0

Strain Overview
Organism Name Pseudomonas protegens CHA0 - Assembly GCF_000397205.1
Species Pseudomonas protegens
Strain CHA0
Description/Title Sample from Pseudomonas protegens CHA0
Annotated Genes 6199
Partial Genes
Host Information
Host Species Taxonomic Name Nicotiana tabacum
Host Species Common Name common tobacco
Host Species Taxonomy ID 4097
Geographic Location
Location Name Switzerland
Isolation Source tobacco root

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000397205.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603271
NCBI Taxonomy ID 1124983
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas protegens CHA0, complete genome.

Annotated Features

Feature Count
gene 6198
CDS 6115
tRNA 68
rRNA 15
pseudo 1

Subcellular Localization

Localization Count
Cytoplasmic 2592
Cytoplasmic Membrane 1492
Periplasmic 204
Outer Membrane 168
Extracellular 59
Unknown 1458
Unknown (This protein may have multiple localization sites) 142
Flagellar 16
Fimbrial 3

Replicons

Name Length GC
Pseudomonas protegens CHA0, complete genome. 6867980 bp 63.4%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs