Pseudomonas poae RE_1-1-14

Strain Overview
Organism Name Pseudomonas poae RE*1-1-14
Species Pseudomonas poae
Strain RE_1-1-14
Description/Title Sample from Pseudomonas poae RE*1-1-14
Annotated Genes 4877
Partial Genes
Host Information
Host Species Taxonomic Name Beta vulgaris subsp. vulgaris
Host Species Common Name sugar beet
Host Species Taxonomy ID 3555
Geographic Location
Isolation Source internal root tissue

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000336465.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02603296
NCBI Taxonomy ID 1282356
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas poae RE*1-1-14, complete genome.

Annotated Features

Feature Count
gene 4877
CDS 4796
tRNA 65
rRNA 16

Subcellular Localization

Localization Count
Cytoplasmic 2111
Cytoplasmic Membrane 1118
Periplasmic 160
Outer Membrane 124
Extracellular 49
Unknown 1117
Unknown (This protein may have multiple localization sites) 117
Flagellar 18
Fimbrial 6
T3SS 2

Replicons

Name Length GC
Pseudomonas poae RE*1-1-14, complete genome. 5512241 bp 60.8%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs