Strain Overview | |
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Organism Name | Pseudomonas aeruginosa PACS2 |
Species | Pseudomonas aeruginosa |
Strain | PACS2 |
Description/Title | Sample from Pseudomonas aeruginosa PACS2 |
Annotated Genes | 5989 |
Partial Genes | 17 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | cystic fibrosis |
Geographic Location |
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Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | paeruginosa | 1394 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | 1 |
Contigs | 1 |
Contig N50 | 6492423 |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02471994 |
NCBI Taxonomy ID | 388272 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome. |
Feature | Count |
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gene | 5980 |
CDS | 5903 |
tRNA | 64 |
rRNA | 12 |
pseudo | 9 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2697 |
Cytoplasmic Membrane | 1339 |
Periplasmic | 168 |
Outer Membrane | 162 |
Extracellular | 68 |
Unknown | 1314 |
Unknown (This protein may have multiple localization sites) | 155 |
Flagellar | 17 |
Fimbrial | 7 |
T3SS | 4 |
Name | Length | GC | |
---|---|---|---|
Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome. | 6492423 bp | 66.3% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF | Orthologs |