Strain Overview | |
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Organism Name | Pseudomonas sp. PH1b |
Species | Pseudomonas sp. |
Strain | PH1b |
Description/Title | Sample from Pseudomonas sp. PH1b |
Annotated Genes | 6645 |
Partial Genes | 217 |
Host Information |
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Geographic Location | |
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Location Name | Malaysia |
Isolation Source | carnivorous plant phytotelma |
Sample Provider | |
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Name | |
Institution | University of Malaya, Genetics |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 89 |
Contig N50 | 345571 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02729860 |
NCBI Taxonomy ID | 1397282 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6597 |
CDS | 6523 |
tRNA | 62 |
pseudo | 48 |
rRNA | 7 |
ncRNA | 5 |
Localization | Count |
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Cytoplasmic | 2704 |
Cytoplasmic Membrane | 1536 |
Periplasmic | 222 |
Outer Membrane | 200 |
Extracellular | 80 |
Unknown | 1635 |
Unknown (This protein may have multiple localization sites) | 146 |
Flagellar | 17 |
Fimbrial | 8 |
T3SS | 4 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |