Pseudomonas sp. PH1b

Strain Overview
Organism Name Pseudomonas sp. PH1b
Species Pseudomonas sp.
Strain PH1b
Description/Title Sample from Pseudomonas sp. PH1b
Annotated Genes 6645
Partial Genes 217
Host Information
Geographic Location
Location Name Malaysia
Isolation Source carnivorous plant phytotelma
Sample Provider
Name
E-mail
Institution University of Malaya, Genetics
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 89
Contig N50 345571
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN02729860
NCBI Taxonomy ID 1397282
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6597
CDS 6523
tRNA 62
pseudo 48
rRNA 7
ncRNA 5

Subcellular Localization

Localization Count
Cytoplasmic 2704
Cytoplasmic Membrane 1536
Periplasmic 222
Outer Membrane 200
Extracellular 80
Unknown 1635
Unknown (This protein may have multiple localization sites) 146
Flagellar 17
Fimbrial 8
T3SS 4

Replicons

89 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF