Pseudomonas entomophila L48

Strain Overview
Organism Name Pseudomonas entomophila L48
Species Pseudomonas entomophila
Strain L48
Description/Title Non-tumor DNA sample from Blood of a human female participant in the dbGaP study "Sequencing of Targeted Genomic Regions Associated with Smoking"
Annotated Genes 5275
Partial Genes
Host Information
Geographic Location
Sample Provider
Name
E-mail
Institution Genoscope
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000026105.1
Assembly Status latest
Scaffolds 1
Contigs
Contig N50 5888780
Assembly Level Complete Genome
Percent GC 64.2
Cross-References
NCBI BioSample Accession SAMEA3138225
NCBI Taxonomy ID 9606
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Pseudomonas entomophila L48 chromosome, complete genome.

Annotated Features

Feature Count
gene 5275
CDS 5134
tRNA 78
rRNA 22
misc_RNA 7

Subcellular Localization

Localization Count
Cytoplasmic 2287
Cytoplasmic Membrane 1178
Periplasmic 156
Outer Membrane 140
Extracellular 51
Unknown 1183
Unknown (This protein may have multiple localization sites) 139
Flagellar 17
Fimbrial 3

Replicons

Name Length GC
Pseudomonas entomophila L48 chromosome, complete genome. 5888780 bp 64.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF Orthologs