Strain Overview | |
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Organism Name | Pseudomonas aeruginosa CF39S |
Species | Pseudomonas aeruginosa |
Strain | CF39S |
Description/Title | |
Annotated Genes | 6780 |
Partial Genes | 52 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Host Species Disease | Cystic Fibrosis |
Geographic Location | |
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Location Name | USA: Seattle, Washington |
Isolation Source | lung |
Latitude/Longitude | 47.608013 N 122.335167 W |
Sample Provider | |
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Name | Jane Burns |
henrik.almblad@ucalgary.ca | |
Institution | University of Calgary |
Date Collected | 1993-03/1996-04 |
Database | Scheme | Sequence Type | Alleles | |||||||
---|---|---|---|---|---|---|---|---|---|---|
PubMLST | paeruginosa | 175 |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
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Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | |
Contig N50 | |
Assembly Level | Complete Genome |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN13226654 |
NCBI Taxonomy ID | 287 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Genome Browsers* | |
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Pseudomonas aeruginosa strain CF39S chromosome, complete genome | |
Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence |
Name | Length | GC | |
---|---|---|---|
Pseudomonas aeruginosa strain CF39S chromosome, complete genome | 6797918 bp | 66.2% |
Replicon details
|
Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence | 468631 bp | 56.6% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |