Pseudomonas aeruginosa UCBPP-PA14, PA14_34130 (icmF3)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse View in GBrowse

Gene Feature Overview

Strain Pseudomonas aeruginosa UCBPP-PA14
Locus Tag
PA14_34130
Name
icmF3
Synonym: tssM3
Replicon chromosome
Genomic location 3032557 - 3036372 (+ strand)
Transposon Mutants 2 transposon mutants in UCBPP-PA14
Transposon Mutants in orthologs 2 transposon mutants in orthologs

Cross-References

RefSeq YP_790882.1
GI 116050301
Entrez 4385120
INSDC ABJ11537.1
NCBI Locus Tag PA14_34130
UniParc UPI000045D2D4
UniProtKB Acc Q02MF4
UniProtKB ID Q02MF4_PSEAB
UniRef100 UniRef100_Q02MF4
UniRef50 UniRef50_W0YQZ1
UniRef90 UniRef90_W0YQZ1

Product

Feature Type CDS
Coding Frame 1
Product Name
IcmF3
Product Name Confidence: Class 1
CommentHcp Secretion Island-III-encoded type VI secretion system (H3-T6SS)
Evidence for Translation
Charge (pH 7) -4.96
Kyte-Doolittle Hydrophobicity Value -0.213
Molecular Weight (kDa) 141.1
Isoelectric Point (pI) 6.18

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown (This protein may have multiple localization sites) Class 3
Additional evidence for subcellular localization

Virulence Evidence

Source 1
Database PseudoCAP
Category Hcp secretion island-3 encoded type VI secretion system (H3-T6SS)
Evidence ECO:0000316
genetic interaction evidence used in manual assertion
Host Organism Arabidopsis thaliana
Notes
Infection model Arabidopsis leaf infiltration model
Reference 19497948

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 86 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003159 (335 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA14_34130
Search term: icmF3
Search term: IcmF3

References

Quorum sensing differentially regulates Pseudomonas aeruginosa type VI secretion locus I and homologous loci II and III, which are required for pathogenesis.
Lesic B, Starkey M, He J, Hazan R, Rahme LG
Microbiology (Reading, Engl.) 2009 Sep;155(Pt 9):2845-55
PubMed ID: 19497948
PubMed ID: 28673999