Pseudomonas aeruginosa PAO1, PA1946 (rbsB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA1946
Name
rbsB
Replicon chromosome
Genomic location 2130854 - 2131813 (+ strand)
Transposon Mutants 2 transposon mutants in PAO1
Transposon Mutants in orthologs 1 transposon mutants in orthologs

Cross-References

RefSeq NP_250636.1
GI 15597142
Affymetrix PA1946_rbsB_at
DNASU PaCD00006871
Entrez 878276
GenBank AAG05334.1
INSDC AAG05334.1
NCBI Locus Tag PA1946
protein_id(GenBank) gb|AAG05334.1|AE004621_5|gnl|PseudoCAP|PA1946
TIGR NTL03PA01946
UniParc UPI00000C5522
UniProtKB Acc Q9I2F8
UniProtKB ID Q9I2F8_PSEAE
UniRef100 UniRef100_Q9I2F8
UniRef50 UniRef50_Q4KEX4
UniRef90 UniRef90_Q9I2F8

Product

Feature Type CDS
Coding Frame 1
Product Name
binding protein component precursor of ABC ribose transporter
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Charge (pH 7) 1.94
Kyte-Doolittle Hydrophobicity Value 0.035
Molecular Weight (kDa) 33.9
Isoelectric Point (pI) 8.44

Subcellular localization

Individual Mappings
Localization Confidence PMID
Periplasmic Class 3
Periplasmic Class 2
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 342 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG003485 (487 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA1946
Search term: rbsB

Human Homologs

References

Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen.
Lewenza S, Gardy JL, Brinkman FS, Hancock RE
Genome Res 2005 Feb;15(2):321-9
PubMed ID: 15687295
Molecular cloning and characterization of genes required for ribose transport and utilization in Escherichia coli K-12.
Iida A, Harayama S, Iino T, Hazelbauer GL
J Bacteriol 1984 May;158(2):674-82
PubMed ID: 6327617
1.7 A X-ray structure of the periplasmic ribose receptor from Escherichia coli.
Mowbray SL, Cole LB
J Mol Biol 1992 May 5;225(1):155-75
PubMed ID: 1583688