Pseudomonas aeruginosa PAO1, PA3266 (capB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse PseudoCyc / Metabolic Pathways

Gene Feature Overview

Strain Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest
Locus Tag
PA3266
Name
capB
Synonym: cspA
Replicon chromosome
Genomic location 3653667 - 3653876 (+ strand)
Transposon Mutants in orthologs 2 transposon mutants in orthologs

Cross-References

RefSeq NP_251956.1
GI 15598462
Affymetrix PA3266_capB_at
DNASU PaCD00007442
Entrez 882429
GenBank AAG06654.1
INSDC AAG06654.1
NCBI Locus Tag PA3266
protein_id(GenBank) gb|AAG06654.1|AE004749_3|gnl|PseudoCAP|PA3266
TIGR NTL03PA03266
UniParc UPI0000128570
UniProtKB Acc P95459
UniProtKB ID CSPA_PSEAE
UniRef100 UniRef100_P95459
UniRef50 UniRef50_P41016
UniRef90 UniRef90_P95459

Product

Feature Type CDS
Coding Frame 1
Product Name
cold acclimation protein B
Product Name Confidence: Class 2
Synonyms
Evidence for Translation
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
Charge (pH 7) 1.22
Kyte-Doolittle Hydrophobicity Value -0.342
Molecular Weight (kDa) 7.6
Isoelectric Point (pI) 9.32

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Cytoplasmic Class 2
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 502 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000447 (851 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PA3266
Search term: capB

Human Homologs

References

The cold shock response of the psychrotrophic bacterium Pseudomonas fragi involves four low-molecular-mass nucleic acid-binding proteins.
Michel V, Lehoux I, Depret G, Anglade P, Labadie J, Hebraud M
J Bacteriol 1997 Dec;179(23):7331-42
PubMed ID: 9393697