Motif View

Internal ID 17656119
Source Database TransTermHP TERM 804
Feature Type terminator
Name
Rho-independent transcription terminator TERM 804
Sequence CGGCAGCCTCGCCGCCCGGCGAGGCTGCCC
Look for more occurrences
Start 3564292
End 3564321
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCCCAGTGATTCCC(5' tail) CGGCAGCCTCGCC(5' stem) GCCC(loop) GGCGAGGCTGCCC(3' stem) TGTCCTTCCCTTCCC(3' tail). Confidence: 91. overlap 3564287

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685