Motif View

Internal ID 17656229
Source Database TransTermHP TERM 989
Feature Type terminator
Name
Rho-independent transcription terminator TERM 989
Sequence CGGCCCTTTCGGGCCG
Look for more occurrences
Start 4266990
End 4267005
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PAO1 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGACGCTGACGAAAA(5' tail) CGGCCC(5' stem) GAAA(loop) GGGCCG(3' stem) GAATCAGCGTGGCTG(3' tail). Confidence: 91.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685