Motif View

Internal ID 17656810
Source Database TransTermHP TERM 375
Feature Type terminator
Name
Rho-independent transcription terminator TERM 375
Sequence CCCCGCCTTGTGCGGGG
Look for more occurrences
Start 1606095
End 1606111
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCATCCGACGAAGAG(5' tail) CCCCGC(5' stem) CTTGT(loop) GCGGGG(3' stem) TTTCTTTTTTGTCCG(3' tail). Confidence: 100. opp_overlap 1606094 1606092, overlap 1606092

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685