Strain |
Pseudomonas aeruginosa PAO1 (Stover et al., 2000)
GCF_000006765.1|latest |
Locus Tag |
PA5316
|
Name |
rpmB
|
Replicon | chromosome |
Genomic location | 5985883 - 5986119 (- strand) |
RefSeq | NP_254003.1 |
GI | 15600509 |
Affymetrix | PA5316_rpmB_at |
DNASU | PaCD00008295 |
Entrez | 880891 |
GenBank | AAG08701.1 |
INSDC | AAG08701.1 |
NCBI Locus Tag | PA5316 |
protein_id(GenBank) | gb|AAG08701.1|AE004944_5|gnl|PseudoCAP|PA5316 |
TIGR | NTL03PA05317 |
UniParc | UPI0000133E45 |
UniProtKB Acc | Q9HTN8 |
UniProtKB ID | RL28_PSEAE |
UniRef100 | UniRef100_A6VEC3 |
UniRef50 | UniRef50_Q6LVN3 |
UniRef90 | UniRef90_C1DK04 |
Feature Type | CDS |
Coding Frame | 1 |
Product Name |
50S ribosomal protein L28
|
Synonyms | |
Evidence for Translation |
Identified using nanoflow high-pressure liquid chromatography (HPLC) in conjunction with microelectrospray ionization on LTQ XL mass spectrometer (PMID:24291602).
|
Charge (pH 7) | 12.91 |
Kyte-Doolittle Hydrophobicity Value | -0.655 |
Molecular Weight (kDa) | 9.1 |
Isoelectric Point (pI) | 12.23 |
Individual Mappings | |
Additional evidence for subcellular localization |
Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
7UNR | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
6SPD | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.28 | ELECTRON MICROSCOPY | 100.0 |
7UNV | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-A) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.7 | ELECTRON MICROSCOPY | 100.0 |
6SPG | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from a clinical isolate | Pseudomonas aeruginosa | 3.34 | ELECTRON MICROSCOPY | 100.0 |
7UNU | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2-GDP (composite structure I-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.9 | ELECTRON MICROSCOPY | 100.0 |
6SPB | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6 | Pseudomonas aeruginosa | 2.82 | ELECTRON MICROSCOPY | 100.0 |
7UNW | RIBOSOME | 04/11/22 | Pseudomonas aeruginosa 70S ribosome initiation complex bound to IF2-GDPCP (structure II-B) | Escherichia coli; Pseudomonas aeruginosa PAO1; SYNTHETIC CONSTRUCT | 2.6 | ELECTRON MICROSCOPY | 100.0 |
6SPF | RIBOSOME | 09/01/19 | Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate | Pseudomonas aeruginosa | 2.89 | ELECTRON MICROSCOPY | 100.0 |
Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 471 genera
|
Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
Pseudomonas Ortholog Group |
POG004887 (528 members) |
Putative Inparalogs | None Found |
STRING database | Search for predicted protein-protein interactions using:
Search term: PA5316
Search term: rpmB
Search term: 50S ribosomal protein L28
|
Primary structure of protein L28 from the large subunit of Escherichia coli ribosomes.
Wittmann-Liebold B, Marzinzig E
FEBS Lett 1977 Sep 1;81(1):214-7
PubMed ID: 332524
|
The roles of proteins L28 and L33 in the assembly and function of Escherichia coli ribosomes in vivo.
Maguire BA, Wild DG
Mol Microbiol 1997 Jan;23(2):237-45
PubMed ID: 9044258
|