Pseudomonas fluorescens A506, PflA506_5301 (tssB1)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas fluorescens A506
GCF_000262325.2|latest
Locus Tag
PflA506_5301
Name
tssB1
Replicon chromosome
Genomic location 5803694 - 5804200 (+ strand)

Cross-References

RefSeq YP_006326687.1
GI 387896390
Entrez 12961800
INSDC AFJ56838.1
NCBI Locus Tag PflA506_5301
UniParc UPI00025E8E62
UniProtKB Acc I2BRF5
UniProtKB ID I2BRF5_PSEFL
UniRef100 UniRef100_A0A0D0SK79
UniRef50 UniRef50_Q4K3N8
UniRef90 UniRef90_Q4K3N8

Product

Feature Type CDS
Coding Frame 1
Product Name
type VI secretion protein TssB1
Synonyms
Evidence for Translation
Charge (pH 7) -3.76
Kyte-Doolittle Hydrophobicity Value -0.220
Molecular Weight (kDa) 18.4
Isoelectric Point (pI) 4.86

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
4UQZ PROTEIN TRANSPORT 06/25/14 Coevolution of the ATPase ClpV, the TssB-TssC Sheath and the Accessory HsiE Protein Distinguishes Two Type VI Secretion Classes PSEUDOMONAS AERUGINOSA PAO1 1.599 X-RAY DIFFRACTION 92.1
5N8N STRUCTURAL PROTEIN 02/23/17 Contracted sheath of a Pseudomonas aeruginosa type six secretion system consisting of TssB1 and TssC1 PSEUDOMONAS AERUGINOSA 3.28 ELECTRON MICROSCOPY 93.8

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 107 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000082 (1260 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PflA506_5301
Search term: tssB1

Human Homologs

References

No references are associated with this feature.