Pseudomonas putida W619, PputW619_1027

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas putida W619
GCF_000019445.1|latest
Locus Tag
PputW619_1027
Name
Replicon chromosome
Genomic location 1131875 - 1132507 (+ strand)

Cross-References

RefSeq YP_001747901.1
GI 170720213
Entrez 6109945
NCBI Locus Tag PputW619_1027

Product

Feature Type CDS
Coding Frame 1
Product Name
TetR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -5.43
Kyte-Doolittle Hydrophobicity Value -0.250
Molecular Weight (kDa) 23915.1
Isoelectric Point (pI) 5.63

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
2UXU TRANSCRIPTION 03/29/07 TtgR in complex with Naringenin PSEUDOMONAS PUTIDA 2.3 X-RAY DIFFRACTION 93.8
2UXH TRANSCRIPTION 03/28/07 TtgR in complex with Quercetin PSEUDOMONAS PUTIDA 2.4 X-RAY DIFFRACTION 93.8
2XDN TRANSCRIPTION 05/04/10 Transcription factor TtgR H67A mutant PSEUDOMONAS PUTIDA 2.2 X-RAY DIFFRACTION 93.3
2UXI TRANSCRIPTION 03/28/07 Phloretin in complex with TtgR PSEUDOMONAS PUTIDA 2.5 X-RAY DIFFRACTION 93.8
2UXO TRANSCRIPTION 03/28/07 TtgR in complex with Tetracycline PSEUDOMONAS PUTIDA 2.7 X-RAY DIFFRACTION 93.8
2UXP TRANSCRIPTION 03/29/07 TtgR in complex Chloramphenicol PSEUDOMONAS PUTIDA 2.7 X-RAY DIFFRACTION 93.8

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 336 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG002095 (539 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PputW619_1027

Human Homologs

References

No references are associated with this feature.