Pseudomonas putida W619, PputW619_1128

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in GBrowse

Gene Feature Overview

Strain Pseudomonas putida W619
GCF_000019445.1|latest
Locus Tag
PputW619_1128
Name
Replicon chromosome
Genomic location 1246673 - 1246882 (- strand)

Cross-References

RefSeq YP_001748002.1
GI 170720314
Entrez 6110047
INSDC ACA71633.1
NCBI Locus Tag PputW619_1128
UniParc UPI0000EB7D62
UniProtKB Acc B1J1A2
UniProtKB ID B1J1A2_PSEPW
UniRef100 UniRef100_A0A088NNW3
UniRef50 UniRef50_P0A105
UniRef90 UniRef90_P0A105

Product

Feature Type CDS
Coding Frame 1
Product Name
cold-shock DNA-binding domain-containing protein
Synonyms
Evidence for Translation
Charge (pH 7) 0.22
Kyte-Doolittle Hydrophobicity Value -0.539
Molecular Weight (kDa) 7.7
Isoelectric Point (pI) 7.54

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 495 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG015263 (217 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PputW619_1128

Human Homologs

Ensembl 97, assembly GRCh38.p12
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value: 1.9e-06
Percent Identity: 38.2
Ensembl 97, assembly GRCh38.p12
lin-28 homolog A [Source:HGNC Symbol;Acc:HGNC:15986]
E-value: 1.9e-06
Percent Identity: 38.2

References

No references are associated with this feature.