Pseudomonas syringae pv. syringae B728a, Psyr_0564

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest
Locus Tag
Psyr_0564
Name
Replicon chromosome
Genomic location 641096 - 641632 (+ strand)

Cross-References

RefSeq YP_233672.1
GI 66043831
Entrez 3366040
INSDC AAY35634.1
NCBI Locus Tag Psyr_0564
UniParc UPI00003950F0
UniProtKB Acc Q4ZYY8
UniProtKB ID ORN_PSEU2
UniRef100 UniRef100_Q4ZYY8
UniRef50 UniRef50_Q4KJ81
UniRef90 UniRef90_Q87VI6

Product

Feature Type CDS
Coding Frame 1
Product Name
oligoribonuclease
Synonyms
Evidence for Translation
Charge (pH 7) -6.62
Kyte-Doolittle Hydrophobicity Value -0.467
Molecular Weight (kDa) 20.6
Isoelectric Point (pI) 5.10

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 216 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004566 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_0564
Search term: oligoribonuclease

Human Homologs

Ensembl 110, assembly GRCh38.p14
RNA exonuclease 2 [Source:HGNC Symbol;Acc:HGNC:17851]
E-value: 6.1e-45
Percent Identity: 50.0

References

No references are associated with this feature.