Pseudomonas syringae pv. syringae B728a, Psyr_0572 (hfq)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest
Locus Tag
Psyr_0572
Name
hfq
Replicon chromosome
Genomic location 650619 - 650879 (+ strand)

Cross-References

RefSeq YP_233680.1
GI 66043839
Entrez 3366048
INSDC AAY35642.1
NCBI Locus Tag Psyr_0572
UniParc UPI00000094C6
UniProtKB Acc Q4ZYY0
UniProtKB ID HFQ_PSEU2
UniRef100 UniRef100_Q48P02
UniRef50 UniRef50_Q9ZI76
UniRef90 UniRef90_Q4KJ73

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA-binding protein Hfq
Synonyms
Evidence for Translation
Charge (pH 7) 1.46
Kyte-Doolittle Hydrophobicity Value -0.085
Molecular Weight (kDa) 9.4
Isoelectric Point (pI) 8.98

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 282 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004559 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_0572
Search term: hfq

Human Homologs

References

No references are associated with this feature.