Pseudomonas syringae pv. syringae B728a, Psyr_3958 (algU)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest
Locus Tag
Psyr_3958
Name
algU
Replicon chromosome
Genomic location 4706018 - 4706599 (- strand)

Cross-References

RefSeq YP_237026.1
GI 66047185
Entrez 3369493
INSDC AAY38988.1
NCBI Locus Tag Psyr_3958
UniParc UPI00000B3363
UniProtKB Acc Q4ZPD4
UniProtKB ID Q4ZPD4_PSEU2
UniRef100 UniRef100_F3ELT6
UniRef50 UniRef50_D0ZSY9
UniRef90 UniRef90_Q06198

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor AlgU
Synonyms
Evidence for Translation
Charge (pH 7) -5.83
Kyte-Doolittle Hydrophobicity Value -0.470
Molecular Weight (kDa) 22.3
Isoelectric Point (pI) 5.16

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
6IN7 TRANSCRIPTION 10/24/18 Crystal structure of AlgU in complex with MucA(cyto) Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 1.96 X-RAY DIFFRACTION 90.2

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 489 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000736 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_3958
Search term: algU

Human Homologs

References

No references are associated with this feature.