Pseudomonas syringae pv. syringae B728a, Psyr_4548 (rplC)

Gene Feature Overview

Strain	Pseudomonas syringae pv. syringae B728a (Feil et al., 2005) GCF_000012245.1|latest
Locus Tag	Psyr_4548
Name	rplC
Replicon	chromosome
Genomic location	5402470 - 5403105 (- strand)

Cross-References

RefSeq	YP_237616.1
GI	66047775
Entrez	3370088
INSDC	AAY39578.1
NCBI Locus Tag	Psyr_4548
UniParc	UPI000050DB14
UniProtKB Acc	Q4ZMP4
UniProtKB ID	RL3_PSEU2
UniRef100	UniRef100_Q4ZMP4
UniRef50	UniRef50_A2SLF7
UniRef90	UniRef90_Q889X1

Product

Feature Type	CDS
Coding Frame	1
Product Name	50S ribosomal protein L3
Synonyms
Evidence for Translation
Charge (pH 7)	9.89
Kyte-Doolittle Hydrophobicity Value	-0.329
Molecular Weight (kDa)	22.6
Isoelectric Point (pI)	10.60

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 633 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001447 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: Psyr_4548 Search term: rplC Search term: 50S ribosomal protein L3

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000424107 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379] E-value: 4.2e-24 Percent Identity: 33.2
Ensembl 110, assembly GRCh38.p14	ENSP00000264995 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379] E-value: 4.2e-24 Percent Identity: 33.2
Ensembl 110, assembly GRCh38.p14	ENSP00000398536 mitochondrial ribosomal protein L3 [Source:HGNC Symbol;Acc:HGNC:10379] E-value: 4.2e-24 Percent Identity: 33.2

References