Pseudomonas syringae pv. syringae B728a, Psyr_4641

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas syringae pv. syringae B728a (Feil et al., 2005)
GCF_000012245.1|latest
Locus Tag
Psyr_4641
Name
Replicon chromosome
Genomic location 5502219 - 5504069 (+ strand)

Cross-References

RefSeq YP_237709.1
GI 66047868
Entrez 3370190
INSDC AAY39671.1
NCBI Locus Tag Psyr_4641
UniParc UPI0000395776
UniProtKB Acc Q4ZMF1
UniProtKB ID Q4ZMF1_PSEU2
UniRef100 UniRef100_Q4ZMF1
UniRef50 UniRef50_P00579
UniRef90 UniRef90_P52326

Product

Feature Type CDS
Coding Frame 1
Product Name
RNA polymerase sigma factor RpoD
Synonyms
Evidence for Translation
Charge (pH 7) -27.57
Kyte-Doolittle Hydrophobicity Value -0.547
Molecular Weight (kDa) 69.5
Isoelectric Point (pI) 4.72

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 591 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000559 (535 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: Psyr_4641

Human Homologs

References

No references are associated with this feature.