Pseudomonas aeruginosa UCBPP-PA14, PA14_30200 (cspD)

Gene Feature Overview

Strain	Pseudomonas aeruginosa UCBPP-PA14 (Lee et al., 2006) GCF_000014625.1|latest
Locus Tag	PA14_30200
Name	cspD
Replicon	chromosome
Genomic location	2616438 - 2616710 (- strand)
Transposon Mutants	1 transposon mutants in UCBPP-PA14

Cross-References

RefSeq	YP_790572.1
GI	116050609
Entrez	4380653
INSDC	ABJ11845.1
NCBI Locus Tag	PA14_30200
UniParc	UPI00000C5770
UniProtKB Acc	Q02NB4
UniProtKB ID	Q02NB4_PSEAB
UniRef100	UniRef100_W0YTN8
UniRef50	UniRef50_A6V4G4
UniRef90	UniRef90_A6V4G4

Product

Feature Type	CDS
Coding Frame	1
Product Name	cold-shock protein CspD
Synonyms
Evidence for Translation
Charge (pH 7)	-1.54
Kyte-Doolittle Hydrophobicity Value	-0.286
Molecular Weight (kDa)	9.6
Isoelectric Point (pI)	5.63

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 497 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002930 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PA14_30200 Search term: cspD Search term: cold-shock protein CspD

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000344401 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 5.2e-08 Percent Identity: 37.1
Ensembl 110, assembly GRCh38.p14	ENSP00000490468 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 5.2e-08 Percent Identity: 37.1
Ensembl 110, assembly GRCh38.p14	ENSP00000489735 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 5.2e-08 Percent Identity: 37.1

References