Pseudomonas aeruginosa M18, PAM18_4079 (oprD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa M18
GCF_000226155.1|latest |
| Locus Tag |
PAM18_4079
|
| Name |
oprD
|
| Replicon | chromosome |
| Genomic location | 4512831 - 4514156 (+ strand) |
Cross-References
| RefSeq | YP_005976662.1 |
| GI | 386060140 |
| Entrez | 12568135 |
| NCBI Locus Tag | PAM18_4079 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
Basic amino acid, basic peptide and imipenem outer membrane porin OprD precursor
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -12.55 |
| Kyte-Doolittle Hydrophobicity Value | -0.445 |
| Molecular Weight (kDa) | 48.0 |
| Isoelectric Point (pI) | 4.74 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
PDB 3D Structures
| Accession | Header | Accession Date | Compound | Source | Resolution | Method | Percent Identity |
| 2ODJ | MEMBRANE PROTEIN | 12/22/06 | Crystal structure of the outer membrane protein OprD from Pseudomonas aeruginosa | Pseudomonas aeruginosa | 2.9 | X-RAY DIFFRACTION | 94.3 |
| 3SY7 | MEMBRANE PROTEIN | 07/15/11 | Improved crystal structure of Pseudomonas aeruginosa OprD | Pseudomonas aeruginosa | 2.15 | X-RAY DIFFRACTION | 94.0 |
| 4FOZ | PROTEIN TRANSPORT | 06/21/12 | Crystal Structure of OccD1 (OprD) Y282R/D307H | Pseudomonas aeruginosa | 2.4 | X-RAY DIFFRACTION | 93.8 |
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 15 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000187 (1579 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PAM18_4079
Search term: oprD
|
Human Homologs
References
No references are associated with this feature.