Pseudomonas aeruginosa DK2, PADK2_24425
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas aeruginosa DK2
GCF_000271365.1|latest |
| Locus Tag |
PADK2_24425
|
| Name |
|
| Replicon | chromosome |
| Genomic location | 5252488 - 5255619 (- strand) |
Cross-References
| RefSeq | YP_006484850.1 |
| GI | 392986263 |
| Entrez | 13173887 |
| NCBI Locus Tag | PADK2_24425 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
Resistance-Nodulation-Cell Division (RND) multidrug efflux transporter MexD
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | -16.84 |
| Kyte-Doolittle Hydrophobicity Value | 0.403 |
| Molecular Weight (kDa) | 111.6 |
| Isoelectric Point (pI) | 4.83 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AMR gene predictions from CARD database
Identified using the Resistance Gene Identifier (RGI)
| Model Name | Definition | Accession | Model Type (?) | SNP | Cutoff | Bit Score | Percent Identity | CARD Version |
| MexD | MexD is the multidrug inner membrane transporter of the MexCD-OprJ complex. [PMID:9449262, PMID:8878035] | ARO:3000801 | protein homolog model | Strict | 1843.6 | 95.52 | 3.2.5 |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 487 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000417 (2093 members) |
| Putative Inparalogs | None Found |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PADK2_24425
|
Human Homologs
References
No references are associated with this feature.