Pseudomonas aeruginosa DK2, PADK2_28395

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Feature Overview

Strain Pseudomonas aeruginosa DK2
GCF_000271365.1|latest
Locus Tag
PADK2_28395
Name
Replicon chromosome
Genomic location 6139099 - 6139878 (+ strand)

Cross-References

RefSeq YP_006485642.1
GI 392987055
Entrez 13175978
NCBI Locus Tag PADK2_28395

Product

Feature Type CDS
Coding Frame 1
Product Name
catabolite repression control protein
Synonyms
Evidence for Translation
Charge (pH 7) -4.40
Kyte-Doolittle Hydrophobicity Value -0.431
Molecular Weight (kDa) 29.8
Isoelectric Point (pI) 5.17

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
8BVJ RNA BINDING PROTEIN 12/04/22 Hfq-Crc-estA translation repression complex Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT 4.5 ELECTRON MICROSCOPY 100.0
8BVH RNA BINDING PROTEIN 12/03/22 Cryo-EM structure of the Hfq-Crc-amiE translation repression assembly. Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT 3.6 ELECTRON MICROSCOPY 100.0
6O1K RNA BINDING PROTEIN/RNA/Hydrolase 02/20/19 Architectural principles for Hfq/Crc-mediated regulation of gene expression. Hfq-Crc-amiE 2:2:2 complex (core complex) Pseudomonas aeruginosa; Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 3.13 ELECTRON MICROSCOPY 100.0
8BVM RNA BINDING PROTEIN 12/04/22 Cryo-EM structure of Hfq-Crc-rbsB translation repression complex Pseudomonas aeruginosa; SYNTHETIC CONSTRUCT 3.8 ELECTRON MICROSCOPY 100.0
4JG3 UNKNOWN FUNCTION 02/28/13 Crystal structure of catabolite repression control protein (crc) from Pseudomonas aeruginosa Pseudomonas aeruginosa 1.8 X-RAY DIFFRACTION 100.0
6O1M RNA BINDING PROTEIN/RNA/HYDROLASE 02/20/19 Architectural principles for Hfq/Crc-mediated regulation of gene expression. Hfq-Crc-amiE 2:4:2 complex Pseudomonas aeruginosa; Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SYNTHETIC CONSTRUCT 3.15 ELECTRON MICROSCOPY 100.0
4F1R TRANSCRIPTION REGULATOR 05/07/12 Structure analysis of the global metabolic regulator Crc from Pseudomonas aeruginos Pseudomonas aeruginosa 2.201 X-RAY DIFFRACTION 100.0
6O1L RNA BINDING PROTEIN/RNA/HYDROLASE 02/20/19 Architectural principles for Hfq/Crc-mediated regulation of gene expression Hfq-Crc-amiE 2:3:2 complex Pseudomonas aeruginosa; Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1); SYNTHETIC CONSTRUCT 3.37 ELECTRON MICROSCOPY 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 492 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG004901 (538 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PADK2_28395

Human Homologs

References

No references are associated with this feature.